Finding and accessing diagrams in biomedical publications.

Tobias Kuhn*, Thaibinh Luong, Michael Krauthammer

*Corresponding author for this work

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

Complex relationships in biomedical publications are often communicated by diagrams such as bar and line charts, which are a very effective way of summarizing and communicating multi-faceted data sets. Given the ever-increasing amount of published data, we argue that the precise retrieval of such diagrams is of great value for answering specific and otherwise hard-to-meet information needs. To this end, we demonstrate the use of advanced image processing and classification for identifying bar and line charts by the shape and relative location of the different image elements that make up the charts. With recall and precisions of close to 90% for the detection of relevant figures, we discuss the use of this technology in an existing biomedical image search engine, and outline how it enables new forms of literature queries over biomedical relationships that are represented in these charts.

Original languageEnglish
Pages (from-to)468-474
Number of pages7
JournalAMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium
Volume2012
Publication statusPublished - 2012
Externally publishedYes

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