Global multiple sequence alignment with repeats.

M. Sammeth, J. Heringa

    Research output: Contribution to JournalArticleAcademicpeer-review


    Repeating fragments in biological sequences are often essential for structure and function. Over the years, many methods have been developed to recognize repeats or to multiply align protein sequences. However, the integration of these two methodologies has been largely unexplored to date. Here, we present a new method capable of globally aligning multiple input sequences under the constraints of a given repeat analysis. The method supports different stringency modes to adapt to various levels of detail and reliability of the repeat information available. © 2006 Wiley-Liss, Inc.
    Original languageEnglish
    Pages (from-to)263-274
    Number of pages12
    Publication statusPublished - 2006


    Dive into the research topics of 'Global multiple sequence alignment with repeats.'. Together they form a unique fingerprint.

    Cite this