Longest common substring made fully dynamic

Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Abstract

Given two strings S and T, each of length at most n, the longest common substring (LCS) problem is to find a longest substring common to S and T. This is a classical problem in computer science with an O(n)-time solution. In the fully dynamic setting, edit operations are allowed in either of the two strings, and the problem is to find an LCS after each edit. We present the first solution to this problem requiring sublinear time in n per edit operation. In particular, we show how to find an LCS after each edit operation in Õ(n2/3) time, after Õ(n)-time and space preprocessing. 1 This line of research has been recently initiated in a somewhat restricted dynamic variant by Amir et al. [SPIRE 2017]. More specifically, they presented an Õ(n)-sized data structure that returns an LCS of the two strings after a single edit operation (that is reverted afterwards) in Õ(1) time. At CPM 2018, three papers (Abedin et al., Funakoshi et al., and Urabe et al.) studied analogously restricted dynamic variants of problems on strings. We show that the techniques we develop can be applied to obtain fully dynamic algorithms for all of these variants. The only previously known sublinear-time dynamic algorithms for problems on strings were for maintaining a dynamic collection of strings for comparison queries and for pattern matching, with the most recent advances made by Gawrychowski et al. [SODA 2018] and by Clifford et al. [STACS 2018]. As an intermediate problem we consider computing the solution for a string with a given set of k edits, which leads us, in particular, to answering internal queries on a string. The input to such a query is specified by a substring (or substrings) of a given string. Data structures for answering internal string queries that were proposed by Kociumaka et al. [SODA 2015] and by Gagie et al. [CCCG 2013] are used, along with new ones, based on ingredients such as the suffix tree, heavy-path decomposition, orthogonal range queries, difference covers, and string periodicity.

Original languageEnglish
Title of host publication27th Annual European Symposium on Algorithms, ESA 2019
EditorsMichael A. Bender, Ola Svensson, Grzegorz Herman
PublisherSchloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing
ISBN (Electronic)9783959771245
DOIs
Publication statusPublished - Sep 2019
Externally publishedYes
Event27th Annual European Symposium on Algorithms, ESA 2019 - Munich/Garching, Germany
Duration: 9 Sep 201911 Sep 2019

Publication series

NameLeibniz International Proceedings in Informatics, LIPIcs
Volume144
ISSN (Print)1868-8969

Conference

Conference27th Annual European Symposium on Algorithms, ESA 2019
CountryGermany
CityMunich/Garching
Period9/09/1911/09/19

Keywords

  • Dynamic algorithms
  • Longest common substring
  • String algorithms

Fingerprint

Dive into the research topics of 'Longest common substring made fully dynamic'. Together they form a unique fingerprint.

Cite this