Potential Genetic Overlap Between Insomnia and Sleep Symptoms in Major Depressive Disorder: A Polygenic Risk Score Analysis

Lindsay M Melhuish Beaupre, Dorret I Boomsma, Brenda W J H Penninx, Yuri Milaneschi, Eco J C de Geus, Gonneke Willemsen, James L Kennedy, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

Background: The prevalence of insomnia and hypersomnia in depressed individuals is substantially higher than that found in the general population. Unfortunately, these concurrent sleep problems can have profound effects on the disease course. Although the full biology of sleep remains to be elucidated, a recent genome-wide association (GWAS) of insomnia, and other sleep traits in over 1 million individuals was recently published and provides many promising hits for genetics of insomnia in a population-based sample. Methods: Using data from the largest available GWAS of insomnia and other sleep traits, we sought to test if sleep variable PRS scores derived from population-based studies predicted sleep variables in samples of depressed cases [Psychiatric Genomics Consortium - Major Depressive Disorder subjects (PGC MDD)]. A leave-one-out analysis was performed to determine the effects that each individual study had on our results. Results: The only significant finding was for insomnia, where p-value threshold, p = 0.05 was associated with insomnia in our PGC MDD sample (R 2 = 1.75-3, p = 0.006). Conclusion: Our results reveal that <1% of variance is explained by the variants that cover the two significant p-value thresholds, which is in line with the fact that depression and insomnia are both polygenic disorders. To the best of our knowledge, this is the first study to investigate genetic overlap between the general population and a depression sample for insomnia, which has important treatment implications, such as leading to novel drug targets in future research efforts.

Original languageEnglish
Article number734077
Pages (from-to)734077
JournalFrontiers in Psychiatry
Volume12
DOIs
Publication statusPublished - 3 Dec 2021

Bibliographical note

Copyright © 2021 Melhuish Beaupre, Tiwari, Gonçalves, Zai, Marshe, Lewis, Martin, McIntosh, Adams, Baune, Levinson, Boomsma, Penninx, Breen, Hamilton, Awasthi, Ripke, Jones, Jones, Byrne, Hickie, Potash, Shi, Weissman, Milaneschi, Shyn, Geus, Willemsen, Brown, Kennedy and Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium.

Funding

This project was supported by the Frederick Banting and Charles Best Canada Graduate Scholarship (LM), the Granville Nickerson Fellowship in Pharmacogenetics (AT), Brain and Behavior Research Foundation: NARSAD (AT), McLaughlin Centre Accelerator Grant (2019-2020) (AT), CAMH Foundation (VG), Brain and Behavior Research Foundation (NARSAD Young Investigator) (VG), McLaughlin Centre Accelerator Grant (VG), Larry and Judy Tanenbaum Foundation (JK). The NTR/NESDA dataset was funded by the: Netherlands Organization for Scientific Research (NWO) and MagW/ZonMW grants 904-61-090, 985-10-002, 912-10-020, 904-61-193,480-04-004, 463-06-001, 451-04-034, 400-05-717, Addiction-31160008, Middelgroot-911-09-032, Spinozapremie 56-464-14192, Center for Medical Systems Biology (CSMB, NWO Genomics), Biobanking and Biomolecular Resources Research Infrastructure (BBMRI–NL, 184.021.007); the European Science Foundation (ESF, EU/QLRT-2001-01254), the European Community’s Seventh Framework Program (FP7/2007-2013), ENGAGE (HEALTH-F4-2007-201413); the European Science Council (ERC Advanced, 230374), Rutgers University Cell and DNA Repository (NIMH U24 MH068457-06), the Avera Institute, Sioux Falls, South Dakota (USA) and the National Institutes of Health (NIH, R01D0042157-01A, MH081802, Grand Opportunity grants 1RC2 MH089951 and 1RC2 MH089995), the Netherlands Organization for Scientific Research (Geestkracht program grant 10-000-1002); the Center for Medical Systems Biology (CSMB, NWO Genomics), Biobanking and Biomolecular Resources Research Infrastructure (BBMRI-NL), VU University’s Institutes for Health and Care Research (EMGO+) and Neuroscience Campus Amsterdam, University Medical Center Groningen, Leiden University Medical Center, National Institutes of Health (NIH, R01D0042157-01A, MH081802, Grand Opportunity grants 1RC2 MH089951 and 1RC2 MH089995), Genetic Association Information Network (GAIN) of the Foundation for the National Institutes of Health. Computing was supported by BiG Grid, the Dutch e-Science Grid, which was financially supported by NWO. This project was supported by the Frederick Banting and Charles Best Canada Graduate Scholarship (LM), the Granville Nickerson Fellowship in Pharmacogenetics (AT), Brain and Behavior Research Foundation: NARSAD (AT), McLaughlin Centre Accelerator Grant (2019-2020) (AT), CAMH Foundation (VG), Brain and Behavior Research Foundation (NARSAD Young Investigator) (VG), McLaughlin Centre Accelerator Grant (VG), Larry and Judy Tanenbaum Foundation (JK). The NTR/NESDA dataset was funded by the: Netherlands Organization for Scientific Research (NWO) and MagW/ZonMW grants 904-61-090, 985-10-002, 912-10-020, 904-61-193,480-04-004, 463-06-001, 451-04-034, 400-05-717, Addiction-31160008, Middelgroot-911-09-032, Spinozapremie 56-464-14192, Center for Medical Systems Biology (CSMB, NWO Genomics), Biobanking and Biomolecular Resources Research Infrastructure (BBMRI?NL, 184.021.007); the European Science Foundation (ESF, EU/QLRT-2001-01254), the European Community's Seventh Framework Program (FP7/2007-2013), ENGAGE (HEALTH-F4-2007-201413); the European Science Council (ERC Advanced, 230374), Rutgers University Cell and DNA Repository (NIMH U24 MH068457-06), the Avera Institute, Sioux Falls, South Dakota (USA) and the National Institutes of Health (NIH, R01D0042157-01A, MH081802, Grand Opportunity grants 1RC2 MH089951 and 1RC2 MH089995), the Netherlands Organization for Scientific Research (Geestkracht program grant 10-000-1002); the Center for Medical Systems Biology (CSMB, NWO Genomics), Biobanking and Biomolecular Resources Research Infrastructure (BBMRI-NL), VU University's Institutes for Health and Care Research (EMGO+) and Neuroscience Campus Amsterdam, University Medical Center Groningen, Leiden University Medical Center, National Institutes of Health (NIH, R01D0042157-01A, MH081802, Grand Opportunity grants 1RC2 MH089951 and 1RC2 MH089995), Genetic Association Information Network (GAIN) of the Foundation for the National Institutes of Health. Computing was supported by BiG Grid, the Dutch e-Science Grid, which was financially supported by NWO.

FundersFunder number
Avera Institute
BBMRI
BBMRI-NL
BiG Grid
Biobanking and Biomolecular Resources Research Infrastructure184.021.007
ENGAGEHEALTH-F4-2007-201413
European Science Council
Larry and Judy Tanenbaum Foundation
McLaughlin Centre Accelerator
Spinozapremie56-464-14192
VU University’s Institutes for Health and Care Research
National Institutes of Health1RC2 MH089951, 1RC2 MH089995, 10-000-1002, MH081802, R01D0042157-01A
National Institute of Mental HealthU24 MH068457-06
Brain and Behavior Research Foundation
National Alliance for Research on Schizophrenia and Depression
Seventh Framework ProgrammeFP7/2007-2013
Centre for Addiction and Mental Health Foundation
European Research Council230374
European Science FoundationEU/QLRT-2001-01254
Vrije Universiteit Amsterdam
Nederlandse Organisatie voor Wetenschappelijk Onderzoek463-06-001, 904-61-090, 904-61-193,480-04-004, 400-05-717, 451-04-034, 985-10-002, 912-10-020
Leids Universitair Medisch Centrum
Centre for Medical Systems Biology

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