Provenance-Centered Dataset of Drug-Drug Interactions

J.M. Banda, T. Kuhn, N.H. Shah, M. Dumontier

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

Abstract

Over the years several studies have demonstrated the ability to identify potential drug-drug interactions via data mining from the literature (MEDLINE), electronic health records, public databases (Drugbank), etc. While each one of these approaches is properly statistically validated, they do not take into consideration the overlap between them as one of their decision making variables. In this paper we present LInked Drug-Drug Interactions (LIDDI), a public nanopublication-based RDF dataset with trusty URIs that encompasses some of the most cited prediction methods and sources to provide researchers a resource for leveraging the work of others into their prediction methods. As one of the main issues to overcome the usage of external resources is their mappings between drug names and identifiers used, we also provide the set of mappings we curated to be able to compare the multiple sources we aggregate in our dataset.
Original languageEnglish
Title of host publicationProceedings of the 14th International Semantic Web Conference (ISWC 2015)
Publication statusPublished - 2015
Event14th International Semantic Web Conference (ISWC 2015) - Bethlehem, United States
Duration: 11 Oct 201515 Oct 2015

Conference

Conference14th International Semantic Web Conference (ISWC 2015)
CountryUnited States
CityBethlehem
Period11/10/1515/10/15

Fingerprint

Drug interactions
Data mining
Decision making
Health

Cite this

Banda, J. M., Kuhn, T., Shah, N. H., & Dumontier, M. (2015). Provenance-Centered Dataset of Drug-Drug Interactions. In Proceedings of the 14th International Semantic Web Conference (ISWC 2015)
Banda, J.M. ; Kuhn, T. ; Shah, N.H. ; Dumontier, M. / Provenance-Centered Dataset of Drug-Drug Interactions. Proceedings of the 14th International Semantic Web Conference (ISWC 2015). 2015.
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Banda, JM, Kuhn, T, Shah, NH & Dumontier, M 2015, Provenance-Centered Dataset of Drug-Drug Interactions. in Proceedings of the 14th International Semantic Web Conference (ISWC 2015). 14th International Semantic Web Conference (ISWC 2015), Bethlehem, United States, 11/10/15.

Provenance-Centered Dataset of Drug-Drug Interactions. / Banda, J.M.; Kuhn, T.; Shah, N.H.; Dumontier, M.

Proceedings of the 14th International Semantic Web Conference (ISWC 2015). 2015.

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

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Banda JM, Kuhn T, Shah NH, Dumontier M. Provenance-Centered Dataset of Drug-Drug Interactions. In Proceedings of the 14th International Semantic Web Conference (ISWC 2015). 2015