Abstract
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species' area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
Original language | English |
---|---|
Article number | 1003 |
Pages (from-to) | 1-12 |
Number of pages | 12 |
Journal | Scientific Reports |
Volume | 8 |
DOIs | |
Publication status | Published - 17 Jan 2018 |
Funding
Brazil. ?Ce?ntrefor Tropical Environmental andSu?tainability ScienceandCollegeofScienceandEngineeringJame? Cook Univer?ity, Cairn?, Queen?land, ? ? ? ?, Autr?aL?alibao. ratório de Ecologia de Doença? Tran?mi??ívei? da Amazônia (EDTA), In?tituto Leônida? e Maria Deane, Fiocruz, Rua Terezina 稃紃簁 Adrianópoli?, Manau?, AM, 簃缃瘃簃瘁? ? ? ?, Br?aPz?irlo. grama de Pó-graduação em Biodiver?idade e Saúde In?tituto O?waldo Cruz - IOC/FIOCRUZ Pav. Arthur Neiva – Térreo Av. Bra?il 稃礃簃笀 – Manguinho?, Rio deJaneiro, RJ, 砃眃瘃稃瘁?礃?C礃en簃tro瘁 d?eInBvreasztili.g aciones Ecológica? de Guayana Univer?idad Nacional Experimental de Guayana, Calle Chile, urbaniz Chilemex, Puerto Ordaz, Bolivar,Venezuela. ?L?aboratorio deEcologíadeBo?que? Tropicale? y PrimatologíaUniver?idaddelo? Ande? Carrera ?圀 ?縀a-?瘁?Bogotá,DC,?眃???P?ro?gr?am,Ca odleoPmób?iaG. raduação emBiologia (Botânica) In?tituto Nacional de Pe? qui?a? da Amazônia - INPA, Av. André Araújo 砃缃礃簁 Petrópoli?, Manau?, AM, 簃缃瘃簃紁稃?In礃?ti紃tut笁e of Brazil. Biodiver?ity and Eco?y?tem Dynamic? Univer?ity of Am?terdam, Sciencepark ? ? ?, Am?terdam, ? ? ? ? XH, The Netherlands. 稃?Programa de Ciencia? del Agro y el Mar Herbario Univer?itario (PORT) UNELLEZ-Guanare, Guanare, Portugue?a, ? ? ? ?, Venez?uE?enlad.a ngered Specie? Coalition, ? ? 礃? Geren Rd, Silver Spring, MD, ? ? ? ? ?, USA. 稃?MAUA Working Group In?tituto Nacional de Pe? qui?a? da Amazônia - INPA Av. André Araújo 砃缃礃簁 Petrópoli?, Manau?, AM, 簃缃瘃簃紁礃紃稃?笁Inve nBtroarzyila. nd Monitoring Program National Park Service 眃砃瘀 Chatham Lane, Frederick?burg, VA, ? ? ? ? ??C,?UenStAe.r for Con?ervation Education and Su?tainability Smith?onian Con?ervation Biology In?titute, 眃眃瘃瘀 Jeffer?on Dr. SW, Suite 礃眃砃礁 Wa?hington, DC, 砃瘃笃稃?簃B瘁iolog瘃ia 紃Ve瘃ge笁tal, USA. Univer?idade E?tadual de Campina?, Caixa Potal 簃眃瘃缁 Campina?, SP, 眃礁瘃縃礁稃?Intit缃ut紃e 瘁of M Bolreaczuill.a r PlantScience?Univer?ityof Edinburgh, Mayfield Rd, Edinburgh, EH礀 笀LR, U笃?KR.oyal BotanicGardenEdinburgh 砃瘀a InverleithRow, Edinburgh, Scotland, EH礀 笀LR, U笃?KP. rograma de Pó?-Graduaçãoem Ecologia, In?titutoNacional de Pequia da Amazônia - INPA, Av. André Araújo 砃缃礃簁 Petrópoli, Manau?, AM, 簃缃瘃簃紁笃?? Fo礃ret紃 E笁colo gByra zil. and Fore?t Management Group Wageningen Univer?ity Wageningen Univer?ity & Re?earch, Droevendaal?e?teeg 礁 Wageningen, P.O. Box 稃紁 簃紃瘃瘀 AA, The Neth笃?eNralatnudra? l. C apital and Plant HealthRoyal BotanicGarden?, Kew, Richmond,Surrey,TW? ?AB,U?KE.? coite ma? Biodiver?idady Con?ervación deE?pecie? Univer?idadE?tatal Amazónica, Km. 砀 眂 砀 vía a Tena (Pa?o Lateral), Puyo, Pa?taza, Ecuad笃?oMr.u ? eo de Hi?toria Natural Noel Kempff Mercado Univer?idad Autónoma Gabriel Rene Moreno, Avenida Irala 笃簃笀 Ca?illa Po? tal 砃稃縃缁 Santa Cruz, Santa Cruz, Bolivia. ?Ce? ntro de Biociência?, Departamento de Botânica e Zoologia, Univer?idade Federal do Rio Grande do Norte, Campu? Univer?itário, Lagoa Nova, Natal, RN, 笃缃瘃紃縁缃紃笃?瘁Dep aBrrtamzeiln. t of Biology Univer?ity of MiamiCoral,Gable?,FL, ??????F,?UaiSrcAh.i ldTropicalBotanic Garden Coral,Gable?,FL, ??????I,?nUsStiAtu. to de Biociência? - Dept. Ecologia, Univer?idade de Sao Paulo - USP, Rua do Matão, Trav. ? ?, no. ? ? ?, Cidade Univer?itária, São Paulo, SP, 瘃笃笃瘃縁瘃缃簃?瘁Dire tBorraiaz idl.e Peq ui?a? Científica?, In?tituto de Peq ui?a? Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 簃?E?cuela de Biología Herbario Alfredo Parede? Univer?idad Central, Ap. Po?tal ? ?. ? ?. ? ? ? ?, Quito, Pichinch?aI?n, tEecrunaadtioorn. al Center for Tropical Botany (ICTB) Department of Biological Science? Florida International Univerity , 眃眃砃瘃瘀 SW 縀th Street, OE 砃稃礁 Miami, FL, 礃礃眃缃缁 USA. 簃?Grupo de Ecología de Eco?i?tema? Terretre Tropicale, Univer?idad Nacional de Colombia Sede Amazonía, Leticia, Amazona?, Colombia. ?I?n?titute of Biological and Health Science?, Federal Univer?ity of Alagoa?, Av. Lourival Melo Mota, ?/n, Tabuleiro do Martin?, Maceio, AL, 笃紃瘃? 码? ? 紃簃?M瘁u?e uBUranziivl.e r?itário/Centro de Ciência? Biológica? e da Natureza/Laboratório de Botânica e Ecologia Vegetal, Univer?idade Federal do Acre, Rio Branco, AC, 簃缃缃眃笁? 笃笃簃?缁Unive Brirdaazdil. Regional Amazónica IKIAM, Km 紀 via Muyuna, Tena, Napo, Ecuador. ?Cira? d UMR Ecofog Agro?PariT ech CNRS INRA Univ Guyane, Campu? agronomique, Kourou Cedex, ? ? ? ? ?, France. 簃?Iwokrama International Programme for Rainfore?t Con?ervation, Georgetown, Guyana. 簃?Department of Biological Science?, Humboldt State Univerity , 眀 Harp?t Street, Arcata, CA, 缃笃笃砃省紃?Ne UwS YAo.r k Botanical Garden 砃缃瘃? Southern Blvd,Bronx,New York,NY, ?????-???S??erv?ici,oU? SdAe.B iodiver?idadEIRL,Jr. Independencia ???, Iquito?, Loreto, 紃縃?, Pe紃?rHu.e rbario Nacional de Bolivia, Univer?itario UMSA, Ca?illa 眃瘃瘃紃紀 Correo Central, La Paz, La Paz, Bolivia. 紃?Mi??ouri Botanical Garden, P.O. Box 砃缃缁 St. Loui?, MO, 簃礃眃簃簁紃?瘃Sc砃ho缃ol缁 of USA. Environmental Science?, Univer?ity of Ea?t Anglia, Norwich, NR ? ?TJ, U?KL.? aboratoire Evolution et Diver?ité Biologique CNRS and Univer?ité Paul Sabatier UMR 笃眃紃稀 EDB, Toulou? e, 礃眃瘃瘃瘁紃?Dep Farratmnceen. t of Fore?try Management, Univer?idad Nacional Agraria La Molina, Avenido La Molina, Apdo. 稃笃簁 La Molina, Lima, Peru. 紃?School of Geo?cience? Univer?ity of Edinburgh, 砃瘃眀 Crew Building, King’? Building?, Edinburgh, EH 缀 礀JN, UK. 紃?Biology Department and Center for Energy, Environment and Sutainability , Wake Fore?t Univerity , 眃縃礃稀 Wake Fore?t Rd, Win?ton Salem, NC, 砃紃眃瘃簁紃?D UeSpAar.t ment of AnthropologyUniver?ityof Texa at Au?tin, SAC 笁眃笃瘁? 砃砃瘃眀 Speedway Stop C 礃砃瘃瘁 Au?tin, TX, 紃縃?A縃n紃de眃 t码o Am UazSoAn. Biodiver?ity Program, Madre de Dio?, Madre de Dios, Peru. ?Fu?ndación Puerto Ra?trojo, Cra 眃? No. ? 稁? ? 簀 Oficina 眃? 瘃?, Bogotá, 縃?CDoCle, Cgioolombia. de Ciencia? Biológica? y Ambientale?-COCIBA & Galapago? In?titute for the Art? and Science?-GAIAS, Univer?idad San Franci?co de Quito-USFQ, Quito, Pichincha, Ecuador. 縃?Department of Wildlife Ecology and Con?ervation Univer?ity of Florida, 眃眃瘀 Newin? Ziegler Hall, Gaine?ville, FL, 礃砃簃眃縃?省Fund UacSióAn. E?tación de Biología, Cra 眃瘀 No. 砃稁紃?Oficina 眃砃瘃省 Bogotá, D縃?CE, mCoblroampab iAam. azônia Oriental, Trav. Dr. Enéa? Pinheiro ?/n 唁 Belém, PA,?????-???I?n?ti,tButroa zdile. Ciencia? Naturale?,Univer?idadNacionaldeColombia,Apartado,????,Bogotá, DC, Colombia. 縃?Amazon Con?ervation Team, Doekhieweg Oo?t 圃砃稁 Paramaribo, Surina縃?mFaec. ultad de Ciencia? Fore?tale? y Medio Ambiente, Univer?idad Nacional de San Antonio Abad del Cu?co, Jirón San Martín ? ? ?, Puerto Maldonado, Madre de Dios, Peru. 縃?Laboratory of Human Ecology, In?tituto Venezolano de Inve?tigacione? Científica?-IVIC, Ado 砃瘃簃礃码 Caraca?, Caraca?, 眃瘃砃瘀A缃?, DVeenpeazrtueemlae.ntEV, Mu?éum national d’hi?toire naturelle de Pari?, 眃簀 rue Buffon, Pari?, 紃笃瘃瘃笁缃?In Ftirtauntcoe .de Ciência Agrária?, Univer?idade Federal Rural da Amazônia, Av. Pre?idente Tancredo Neve? 砃笃瘃省 Belém, PA, 簃簁瘃紃紁缃?PR缃OT瘃E省RRA, BInratiztiul.t o de Inve?tigacione? de la Amazonía Peruana (IIAP), Av. A. Quiñone? km ? 笁 Iquito?, Loreto, 紃縃? 缃?A, PCeErEuR. Foundation, Jirón Cu?co N 묀 礃紃瘁 Puerto Maldonado, Madre de Dio?, 缃?UPenrivue. ridad Autónoma del Beni Jo?é Ballivián, Campu? Univer?itario Final Av. Ejercito, Riberalta, Beni, Bolivia. 缃?Regional Norte Amazónico, Centro de Inve?tigación y Promoción del Campe?inado, C/Nicanor Gonzalo Salvatierra N 묀 ? ? ?, Riberalta, Beni, Bolivia. ?Envi? ronmental Change In?titute, Oxford Univer?ity Centre for the Environment, Dy?on Perrin? Building, South Park? Road, Oxford, England, OX 眀 礀QY, U缃?KS. chool of Agriculture and Food Science? - ARCCentre of Excellence for Environmental Deci?ion? CEED, The Univer?ity of Queen?land, St. Lucia, QLD ? ? ? ?, Autr?aI?nlsiat.it uto de Inve?tigacione? para el De?arrollo Fore?tal (INDEFOR), Univer?idad de lo? Ande?, Conjunto Fore?tal, C.P. ? ? ? ?, Mérida, Mérida, Venezuela. 缃?School of Environmental and Fore?t Science?, Univer?ity of Wa?hington, Seattle, WA, 缃縃眃缃笁砃眃眃瘃?瘃U瘁niver U? iStyAo. f Nottingham, Univer?ity Park, Nottingham, NG 紀 砀RD, U眃瘃?K.G eography and the Environment, Univer?ity of Texa at Au?tin, 礃瘃笀 E. 砃礀rd Street, CLA building, Au?tin, TX, 紃縃紃眃?眃La?码bora UtóSriAo. de Ciência? Ambientai?, Univer?idade E?tadual do Norte Fluminen?e, Av. Alberto Lamego 砃瘃瘃瘁 Campo? do? Goyatacaze?, RJ, 砃縃瘃眃礁簃砃眃瘃?瘁Dep Barrtamzile.n t of Biology, Univer?ity of Maryland, College Park, MD, 砃瘃紃稃码? USA. 眃瘃?GeoIS, El Día 礃簃缀 y El Telégrafo, 礃묀 Pio, Quito, Pichincha, Ecu眃瘃?aEdnovr.i ronmental Science and Policy, Northern ArizonaUniver?ity,Flag?taff,AZ, ??????,?FUO?SMA.A BO,Manejo Fore?tal en la? Tierra? Tropicale? de Bolivia, Sacta, Cochabamba, Bolivia. ? ?E?cu? ela de Ciencia? Fore?tale? (ESFOR), Univer?idad Mayor de San Simon (UMSS), Sacta, Cochabamba, Bolivia. ??Agricu? ltural Service?, Mini?try of Agro-Indu?try and Food Security, Agricultural Service?, Mini?try of Agro-Indu?try and Food Security, The Mauritiu? Herbarium, Reduit, Mauritiu?. ??De?partment of Bio?cience, Aarhu? Univer?ity, Building ? ? ? ? Ny Munkegade, Aarhu? C, Aarhu?, DK-? ? ? ?, Denmark. 眃眃?Ciencia? Biológica?, Univer?idad de Lo? Ande?, Carrera 眀 圀 眃縀a-眃瘁 Bogotá, DC, 眃眃眃紃眃省 Colombia. ??M?edio Ambiente, PLUSPRETOL, Iquito?, Loreto, Peru. ? ?Ce?nter for Con?ervation Education and Su?tainability, Smith?onian’? National Zoo & Con?ervation Biology In?titute, National Zoological Park, 礃瘃瘃眀 Connecticut Ave, Wa?hington, DC, 砃瘃瘃瘃縁 眃眃?TUrSoApe.nbo? International,Lawick?eAllee ??PO Box ???,Wageningen, ????AE,The Netherlands. 眃眃?In?tituto de Biodiver?idade e Flore?ta, Univer?idade Federal do Oe?te do Pará, Rua Vera Paz, Campu? Tapajó, Santarém, PA, 簃縃瘃眃笁? 眃眃眃眃?瘁Dep aBrrtamzeil.n t of Biology, Univer?ity of Mi??ouri, St. Loui?, MO, 簃礃眃砃省? USA. 眃眃?Facultad de Biologia, Univer?idad Nacional de la Amazonia Peruana, Peva? 笀ta cdra, Iquito?, Loreto, Peru. 眃眃?School of Anthropology and Con?ervation, Univer?ity of Kent, Marlowe Building, Canterbury, Kent, CT 砀 紀NR, UK. 眃眃?Herbario Nacional del Ecuador, Univer?idad Técnica del Norte, Quito, Pichincha, Ecuador. 眃眃?Ecology & Biodiver?ity Group, UtrechtUniver?ity, Padualaan 縁 Utrecht, 礃笃縃稀 CH, The Nethe眃砃?rlSayn?dt?e.m? Ecology, Free Univer?ity, De Boelelaan 眃瘃縃紁 Am?terdam, 眃瘃縃眀 HV, Netherland?. Corre?pondence and reque?t? for material? ?hould be addre??ed to H.S. (email: [email protected])
Funders | Funder number |
---|---|
Natural Environment Research Council | NE/N011570/1, NE/N012542/1, NE/M022021/1, NE/N01250X/1, NE/D01025X/1, NE/I02982X/1 |
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior | |
Ministério da Ciência, Tecnologia e Inovação | 407232/2013-3-PVE |
Conselho Nacional de Desenvolvimento Científico e Tecnológico | |
Ministério da Educação |