Strain-aware assembly of genomes from mixed samples using flow variation graphs

Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth*

*Corresponding author for this work

Research output: Chapter in Book / Report / Conference proceedingConference contributionAcademicpeer-review

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Abstract

The goal of strain-aware genome assembly is to reconstruct all individual haplotypes from a mixed sample at the strain level and to provide abundance estimates for the strains.

Original languageEnglish
Title of host publicationResearch in Computational Molecular Biology
Subtitle of host publication24th Annual International Conference, RECOMB 2020, Padua, Italy, May 10–13, 2020, Proceedings
EditorsRussell Schwartz
PublisherSpringer
Pages221-222
Number of pages2
ISBN (Electronic)9783030452575
ISBN (Print)9783030452568
DOIs
Publication statusPublished - 2020
Event24th Annual Conference on Research in Computational Molecular Biology, RECOMB 2020 - Padua, Italy
Duration: 10 May 202013 May 2020

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12074 LNBI
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference24th Annual Conference on Research in Computational Molecular Biology, RECOMB 2020
CountryItaly
CityPadua
Period10/05/2013/05/20

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