TY - JOUR
T1 - Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit
AU - Dijkstra, Maurits J J
AU - van der Ploeg, Atze J
AU - Feenstra, K Anton
AU - Fokkink, Wan J
AU - Abeln, Sanne
AU - Heringa, Jaap
N1 - © The Author(s) 2019. Published by Oxford University Press.
PY - 2019/12/15
Y1 - 2019/12/15
N2 - SUMMARY: PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow.AVAILABILITY AND IMPLEMENTATION: PRALINE 2 is implemented in Python and available as open source software on GitHub: https://github.com/ibivu/PRALINE/.SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
AB - SUMMARY: PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow.AVAILABILITY AND IMPLEMENTATION: PRALINE 2 is implemented in Python and available as open source software on GitHub: https://github.com/ibivu/PRALINE/.SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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U2 - 10.1093/bioinformatics/btz572
DO - 10.1093/bioinformatics/btz572
M3 - Article
C2 - 31368486
SN - 1367-4803
VL - 35
SP - 5315
EP - 5317
JO - Bioinformatics (Oxford, England)
JF - Bioinformatics (Oxford, England)
IS - 24
ER -