Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

SUMMARY: PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow.

AVAILABILITY AND IMPLEMENTATION: PRALINE 2 is implemented in Python and available as open source software on GitHub: https://github.com/ibivu/PRALINE/.

SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Original languageEnglish
Pages (from-to)5315-5317
Number of pages3
JournalBioinformatics (Oxford, England)
Volume35
Issue number24
Early online date1 Aug 2019
DOIs
Publication statusPublished - 15 Dec 2019

Bibliographical note

© The Author(s) 2019. Published by Oxford University Press.

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