The role of the halogen bond in iodothyronine deiodinase: Dependence on chalcogen substitution in naphthyl-based mimetics

Diego Cesario, Mariagrazia Fortino, Tiziana Marino, Francesca Nunzi, Nino Russo, Emilia Sicilia*

*Corresponding author for this work

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

The effects on the activity of thyroxine (T4) due to the chalcogen replacement in a series of peri-substituted naphthalenes mimicking the catalytic function of deiodinase enzymes are computationally examined using density functional theory. In particular, T4 inner-ring deiodination pathways assisted by naphthyl-based models bearing two tellurols and a tellurol-thiol pair in peri-position are explored and compared with the analogous energy profiles for the naphthalene mimic having two selenols. The presence of a halogen bond (XB) in the intermediate formed in the first step and involved in the rate-determining step of the reaction is assumed to facilitate the process increasing the rate of the reaction. The rate-determining step calculated energy barrier heights allow rationalizing the experimentally observed superior catalytic activity of tellurium containing mimics. Charge displacement analysis is used to ascertain the presence and the role of the electron density charge transfer occurring in the rate-determining step of the reaction, suggesting the incipient formation or presence of a XB interaction.

Original languageEnglish
Pages (from-to)944-951
Number of pages8
JournalJournal of Computational Chemistry
Volume40
Issue number8
Early online date25 Jan 2019
DOIs
Publication statusPublished - 30 Mar 2019

Funding

[a] D. Cesario Department of Chemistry and Pharmaceutical Sciences, Amsterdam Center for Multiscale Modeling, Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands [b] D. Cesario, F. Nunzi Department of Chemistry, Biology and Biotechnology, University of Perugia, I-06123, Perugia, Italy [c] M. Fortino, T. Marino, N. Russo, E. Sicilia Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, I-87030, Arcavacata di Rende, Italy E-mail: [email protected] [d] F. Nunzi Istituto di Scienze e Tecnologie Molecolari del CNR (ISTM-CNR), I-06123, Perugia, Italy [e] F. Nunzi Consortium for Computational Molecular and Materials Sciences (CMS)2, I-06123, Perugia, Italy Contract Grant sponsor: Università degli Studi di Perugia; Contract Grant sponsor: MIUR; Contract Grant sponsor: Università della Calabria This work has been financially supported by Università della Calabria and carried out within the FP7-PEOPLE-2011-IRSES, Project no. 295172, and by MIUR and Università degli Studi di Perugia through the project AMIS, within the program “Dipartimenti di Eccellenza – 2018–2022.”

FundersFunder number
Ministero dell’Istruzione, dell’Università e della Ricerca
Università della Calabria295172
Università degli Studi di Perugia

    Keywords

    • charge displacement
    • deiodinase mimics
    • density functional theory
    • halogen bond
    • mechanism

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