Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1)

A.E. Greijer, P. van der Groep, D. Kemming, A. Shvarts, G.L. Semenza, G.J. Meijer, M.A. van de Wiel, J.A.M. Belien, P Van Diest, E.E. van der Wall

Research output: Contribution to JournalArticleAcademicpeer-review

Abstract

The hypoxia-inducible factor 1 (HIF-1) plays a critical role in cellular responses to hypoxia. The aim of the present study was to evaluate which genes are induced by hypoxia, and whether this induction is mediated by HIF-1, by expression microarray analysis of wt and HIF-1α null mouse fibroblasts. Forty-five genes were up-regulated by hypoxia and 40 (89%) of these were regulated by HIF-1. Of the 114 genes down-regulated by hypoxia, 19 (17%) were HIF-1-dependent. All glycolytic enzymes were strongly up-regulated by hypoxia in a HIF-1-dependent manner. Genes already known to be related to hypoxia, such as glucose transporter 1, BNIP3, and hypoxia-induced gene 1, were induced. In addition, multiple new HIF-1-regulated genes were identified, including genes involved in metabolism (adenylate kinase 4, galactokinase), apoptosis (galectin-3 and gelsolin), and invasion (RhoA). Genes down-regulated by hypoxia were involved in cytoskeleton maintenance (Rho kinase), mRNA processing (heterogeneous nuclear ribonucleoprotein H1 and splicing factor), and DNA repair (REV3). Furthermore, seven cDNAs from genes with unknown function or expressed sequence tags (ESTs) were up-regulated and 27 such cDNAs were down-regulated. In conclusion, hypoxia causes down- rather than up-regulation of gene expression and HIF-1 seems to play a major role in the regulation of hypoxia-induced genes. Copyright © 2005 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
Original languageEnglish
Pages (from-to)291-304
JournalJournal of Pathology
Volume206
Issue number3
DOIs
Publication statusPublished - 2005

Fingerprint

Hypoxia-Inducible Factor 1
Gene Expression Regulation
Up-Regulation
Genes
Complementary DNA
Galactokinase
Hypoxia
Gelsolin
Heterogeneous-Nuclear Ribonucleoproteins
Galectin 3
Adenylate Kinase
rho-Associated Kinases
Facilitative Glucose Transport Proteins
Expressed Sequence Tags
Microarray Analysis
Cytoskeleton
Ireland
DNA Repair
Fibroblasts
Maintenance

Cite this

Greijer, A. E., van der Groep, P., Kemming, D., Shvarts, A., Semenza, G. L., Meijer, G. J., ... van der Wall, E. E. (2005). Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1). Journal of Pathology, 206(3), 291-304. https://doi.org/10.1002/path.1778
Greijer, A.E. ; van der Groep, P. ; Kemming, D. ; Shvarts, A. ; Semenza, G.L. ; Meijer, G.J. ; van de Wiel, M.A. ; Belien, J.A.M. ; Van Diest, P ; van der Wall, E.E. / Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1). In: Journal of Pathology. 2005 ; Vol. 206, No. 3. pp. 291-304.
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title = "Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1)",
abstract = "The hypoxia-inducible factor 1 (HIF-1) plays a critical role in cellular responses to hypoxia. The aim of the present study was to evaluate which genes are induced by hypoxia, and whether this induction is mediated by HIF-1, by expression microarray analysis of wt and HIF-1α null mouse fibroblasts. Forty-five genes were up-regulated by hypoxia and 40 (89{\%}) of these were regulated by HIF-1. Of the 114 genes down-regulated by hypoxia, 19 (17{\%}) were HIF-1-dependent. All glycolytic enzymes were strongly up-regulated by hypoxia in a HIF-1-dependent manner. Genes already known to be related to hypoxia, such as glucose transporter 1, BNIP3, and hypoxia-induced gene 1, were induced. In addition, multiple new HIF-1-regulated genes were identified, including genes involved in metabolism (adenylate kinase 4, galactokinase), apoptosis (galectin-3 and gelsolin), and invasion (RhoA). Genes down-regulated by hypoxia were involved in cytoskeleton maintenance (Rho kinase), mRNA processing (heterogeneous nuclear ribonucleoprotein H1 and splicing factor), and DNA repair (REV3). Furthermore, seven cDNAs from genes with unknown function or expressed sequence tags (ESTs) were up-regulated and 27 such cDNAs were down-regulated. In conclusion, hypoxia causes down- rather than up-regulation of gene expression and HIF-1 seems to play a major role in the regulation of hypoxia-induced genes. Copyright {\circledC} 2005 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.",
author = "A.E. Greijer and {van der Groep}, P. and D. Kemming and A. Shvarts and G.L. Semenza and G.J. Meijer and {van de Wiel}, M.A. and J.A.M. Belien and {Van Diest}, P and {van der Wall}, E.E.",
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Greijer, AE, van der Groep, P, Kemming, D, Shvarts, A, Semenza, GL, Meijer, GJ, van de Wiel, MA, Belien, JAM, Van Diest, P & van der Wall, EE 2005, 'Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1)' Journal of Pathology, vol. 206, no. 3, pp. 291-304. https://doi.org/10.1002/path.1778

Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1). / Greijer, A.E.; van der Groep, P.; Kemming, D.; Shvarts, A.; Semenza, G.L.; Meijer, G.J.; van de Wiel, M.A.; Belien, J.A.M.; Van Diest, P; van der Wall, E.E.

In: Journal of Pathology, Vol. 206, No. 3, 2005, p. 291-304.

Research output: Contribution to JournalArticleAcademicpeer-review

TY - JOUR

T1 - Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1)

AU - Greijer, A.E.

AU - van der Groep, P.

AU - Kemming, D.

AU - Shvarts, A.

AU - Semenza, G.L.

AU - Meijer, G.J.

AU - van de Wiel, M.A.

AU - Belien, J.A.M.

AU - Van Diest, P

AU - van der Wall, E.E.

PY - 2005

Y1 - 2005

N2 - The hypoxia-inducible factor 1 (HIF-1) plays a critical role in cellular responses to hypoxia. The aim of the present study was to evaluate which genes are induced by hypoxia, and whether this induction is mediated by HIF-1, by expression microarray analysis of wt and HIF-1α null mouse fibroblasts. Forty-five genes were up-regulated by hypoxia and 40 (89%) of these were regulated by HIF-1. Of the 114 genes down-regulated by hypoxia, 19 (17%) were HIF-1-dependent. All glycolytic enzymes were strongly up-regulated by hypoxia in a HIF-1-dependent manner. Genes already known to be related to hypoxia, such as glucose transporter 1, BNIP3, and hypoxia-induced gene 1, were induced. In addition, multiple new HIF-1-regulated genes were identified, including genes involved in metabolism (adenylate kinase 4, galactokinase), apoptosis (galectin-3 and gelsolin), and invasion (RhoA). Genes down-regulated by hypoxia were involved in cytoskeleton maintenance (Rho kinase), mRNA processing (heterogeneous nuclear ribonucleoprotein H1 and splicing factor), and DNA repair (REV3). Furthermore, seven cDNAs from genes with unknown function or expressed sequence tags (ESTs) were up-regulated and 27 such cDNAs were down-regulated. In conclusion, hypoxia causes down- rather than up-regulation of gene expression and HIF-1 seems to play a major role in the regulation of hypoxia-induced genes. Copyright © 2005 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

AB - The hypoxia-inducible factor 1 (HIF-1) plays a critical role in cellular responses to hypoxia. The aim of the present study was to evaluate which genes are induced by hypoxia, and whether this induction is mediated by HIF-1, by expression microarray analysis of wt and HIF-1α null mouse fibroblasts. Forty-five genes were up-regulated by hypoxia and 40 (89%) of these were regulated by HIF-1. Of the 114 genes down-regulated by hypoxia, 19 (17%) were HIF-1-dependent. All glycolytic enzymes were strongly up-regulated by hypoxia in a HIF-1-dependent manner. Genes already known to be related to hypoxia, such as glucose transporter 1, BNIP3, and hypoxia-induced gene 1, were induced. In addition, multiple new HIF-1-regulated genes were identified, including genes involved in metabolism (adenylate kinase 4, galactokinase), apoptosis (galectin-3 and gelsolin), and invasion (RhoA). Genes down-regulated by hypoxia were involved in cytoskeleton maintenance (Rho kinase), mRNA processing (heterogeneous nuclear ribonucleoprotein H1 and splicing factor), and DNA repair (REV3). Furthermore, seven cDNAs from genes with unknown function or expressed sequence tags (ESTs) were up-regulated and 27 such cDNAs were down-regulated. In conclusion, hypoxia causes down- rather than up-regulation of gene expression and HIF-1 seems to play a major role in the regulation of hypoxia-induced genes. Copyright © 2005 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

U2 - 10.1002/path.1778

DO - 10.1002/path.1778

M3 - Article

VL - 206

SP - 291

EP - 304

JO - Journal of Pathology

JF - Journal of Pathology

SN - 0022-3417

IS - 3

ER -